PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 318837
Common NameARALYDRAFT_318837
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 354aa    MW: 40318.7 Da    PI: 6.8869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
318837genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05197216120
              EEETTTTEEESSHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
              ++Cp C k+F+r  n++ H+
   318837 197 FSCPLCFKTFNRYNNMQMHM 216
              89*****************9 PP

2zf-C2H2130.00031281303123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              + C  Cgk F  k + ++H +++
   318837 281 FACRRCGKAFAVKGDWRTHEKNC 303
              78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66197224IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5197216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SuperFamilySSF576672.85E-6267301No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5268301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767281301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MADPACIFKN GYVDYYDYSF NYATSLSRIY NSHDSFYYPH HTTNPNINTN PNFTSPDSPP  60
LREALPLLSL SPIHKHQEPI AHHHEYYFME TTETSSNSNF IDHDLGQSQE THRHLDVAVD  120
LHLGLPNLGD GGSSSSDVVL ESTDFQEHHH DHHQDQGVEV TIASDHDDDH GGLQRGNHLH  180
HFWIPTPSQI LMGPTQFSCP LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTAMLK  240
LPCYCCAPGC KNNIDHPRAR PLKDFRTLQT HYKRKHGVRP FACRRCGKAF AVKGDWRTHE  300
KNCGKLWYCS CGSDFKHKRS LKDHVKAFGN GHVPCCGIDH EEEEAASDVE QQE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885409.10.0hypothetical protein ARALYDRAFT_318837
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLD7KZX70.0D7KZX7_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_30018530.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4